Hi there,
Check the schematics on this site for tube layout/function. Secondly, 12ax7's are NOT an upgrade to a true 7025. Real 7025's are a lower noise version of a 12ax7. To keep cost down, you might try Electro-Harmonix 12ax7's..I've had good luck with them and for my money they are the best sounding new production 12ax7's (YMMV)
Assuming the 2nd gen T is very similar to the 1st gen T, then the 3rd preamp tube is the phase invertor, not a tone related spot. As far as output, many opinions are out there, you're ears are your final judge. IMHO, unless you can find and afford a good matched quad of Tung Sol 6550's, I prefer the sound of quality KT-88's. Heard good things about the JJ's but never tried them yet. I do have new Svetlana's in my T and they're pretty darn good.
Fun in the Sunn!