Sunn amps, as with all the other handwired amps I've experienced, seem to have slightly different personalities as far as tone and breakup characteristics, and it doesn't seem to be purely components. I think it's the whole overall balance of the "sum of it's parts" effect.
Among my old Sunns I have a '66 100S and a '66 200S that are both refurbished as close to stock specs as possible; all new caps, any resistors/pots that had drifted replaced, same mfg/age tube compliment, transformers as close to identical as practically possible, etc., and the 100S is louder AND cleaner than the 200S. (of course, just the opposite of what I was shooting for!). I've switched tubes, even transformers, but there it is.. the guitar amp is a better bass amp than the bass amp. I have another '67 200S that has only had the filter caps replaced, and with the original Sunn branded KT88's it's still stronger at high volumes than either of the '66's. The the '67 starts to slightly distort at about 5.5 but doesn't get dirtier-just louder, until it gets to about 8, and then it's "Live at Leeds". The '66 100S stays clean until almost 8, and the '66 200S starts to break up at 6.5.
I have a copy of a letter from Robert P. Selby Jr. to all Sunn dealers announcing (and rationalizing) the switch to domestic 6550’s from British KT88’s dated 3/3/69, so I would imagine that your 1/27/69 date would have had to be an early 6550 equipped amp. I have a Sunn schematic binder that had been kept updated with the most current schematics for all amps from 11/67 through 5/69, and I also can't find a Sonaro schematic showing anything other than EL34's. But, the only real difference I can see on the schematics from the KT88/6550 amps is the power transformer voltages.
None of my old Sunns cut opposing frequencies in the tone stack, pots or boost switches. If yours does, it may need a trip to a amp hospital in your area.