First, punctuation is your friend. And if not yours, then certainly mine. It would make your post immeasurably easier to read. Paragraphs help, too.
The differences between the 1st and 2nd generation Model T amps lie mainly in the mid select and tone circuitry. The mid control is a boost and it is always on. The control merely determines how much boost you get. Turning it to zero does not get rid of the boost.
The tone controls on the 2nd gen are boost and cut controls, like those on a hi-fi stereo amp, whereas the 1st gen tone controls are boost only, like conventional guitar amp tone controls. So, for flattest response on most amps, set the tone controls to zero. On the 2nd gen, set the treble and bass to 5, the mid to zero.
Finally, there is a strange bit of wiring in the master volume circuitry on the 2nd gen involving a white/blue wire which causes the output to go down when you turn the master up past 8. I don't know why it's in there.
I got all this information from Joe Arthur, a very knowledgeable fellow who used to hang out here.
On my 2nd gen T, I removed the white/blue wire, which made the master volume work as one would normally expect, and modified the mid boost circuit so that the boost is zero when the control is at zero, per Joe Arthur's instructions. IMO, it sounds much, much better now.